Stem-loop eca-mir-9058a

Accession

MI0028230

Description

Equus caballus eca-mir-9058a precursor miRNA

Sequence

349 reads, 2 reads per million, 1 experiments

uuccagccuuguggcugccagaugggugcucucuacuagugcugugcagaggcuuucccugaggcugcUGUGAGCCUGUAGGGUUUGCCCCuaggcuacgaagcugggucgcuggaacucc
.((((((.((((((((...((..(((((..((((((.((.(((..((((.((((((....)))))).)))).)))))))))))..))))))).)))))))).)))))).............

Structure

------------u      c        gcc  au     cu      u  u   gu    a      c 
             uccagc uuguggcu   ag  gggug  cucuac ag gcu  gcag ggcuuu c
             |||||| ||||||||   ||  |||||  |||||| || |||  |||| ||||||  
             gggucg agcaucgg   uC  CCCGU  GGGAUG UC CGA  UGUc ucggag c
ccucaaggucgcu      a        --a  --     UU      -  -   -G    g      u 

Annotation confidence Not enough data

Genome context

chr1: 49250181-49250301 [-]

Mature eca-miR-9058a

• Accession: MIMAT0034602
• Description: Equus caballus eca-miR-9058a mature miRNA
• Sequence: 69 - UGUGAGCCUGUAGGGUUUGCCCC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545