Stem-loop eca-mir-8934-2

Accession

MI0028292

Description

Equus caballus eca-mir-8934-2 precursor miRNA

Sequence

362 reads, 2.0 reads per million, 77 experiments

ugguccccaugaaaacgggcagccaagggggcucggggggCCCCUGGAGGCCUCUGUACCCCACUugagaaaggguggcaguggggcagcaggccuggggcccccagggcuccaccguuccugcuuggggaccugagaggugcac
.((((((((.(....((((.(((....(((((((.(((((((((...(((((((((..((((((((.(.......).).)))))))))).))))))))))))))).)))))))...)))))))).))))))))............

Structure

-----------u        u aaaa    c   caag       g         UGG      -   UA       - g ga 
            ggucccca g    cggg agc    ggggcuc gggggCCCC   AGGCCU CUG  CCCCACU u a  a
            |||||||| |    |||| |||    ||||||| |||||||||   |||||| |||  ||||||| | |  a
            ccaggggu c    gucc uug    ccucggg cccccgggg   uccgga gac  gggguga g u  g
cacguggagagu        u ----    -   -cca       a         ---      c   --       c g gg 

Annotation confidence Not enough data

Genome context

12: 34733762-34733906 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-8934-2

Mature eca-miR-8934-5p

• Accession: MIMAT0034463
• Description: Equus caballus eca-miR-8934-5p mature miRNA
• Sequence: 41 - CCCCUGGAGGCCUCUGUACCCCACU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545