Stem-loop eca-mir-9123

Accession

MI0028304

Description

Equus caballus eca-mir-9123 precursor miRNA

Sequence

88 reads, 13 reads per million, 1 experiments

uaagcagguccccgugugggaccagcgugcgucuuccgucgcuguuccucugcucaagaagcgcgcgcgcgcgcgCGCGCCUUCUCAGAGGUACAGGAUCuugugagcuuccucagggaggacucugcuucccga
.((((((((((((.((.((((..(((.((((......(((.((((.((((((....((((((((((((....))))))).))))))))))).)))))))..)))).))))))))).)).)))).)))))).....

Structure

----u      -    -  g  u    cc   g    ucuucc   g    u      cuca     -       g 
     aagcag gucc cc ug ggga  agc ugcg      guc cugu ccucug    agaag cgcgcgc c
     |||||| |||| || || ||||  ||| ||||      ||| |||| ||||||    ||||| |||||||  
     uucguc cagg gg ac uccu  ucg gugu      UAG GACA GGAGAC    UCUUC GCGCgcg g
agccc      u    a  g  -    --   a    ----uC   -    U      ----     C       c 

Annotation confidence Not enough data

Genome context

chr12: 2584516-2584650 [+]

Mature eca-miR-9123

• Accession: MIMAT0034673
• Description: Equus caballus eca-miR-9123 mature miRNA
• Sequence: 76 - CGCGCCUUCUCAGAGGUACAGGAUC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545