Stem-loop eca-mir-9175

Accession

MI0028403

Description

Equus caballus eca-mir-9175 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

ccuuugugccaccaccacuccccauccccuaacccugcucugagggguuuuuaaugaaguggcaucugaaguaugcgcucUAGACAUUGGCCCUGGAUCCUUGGGggcagggggcggggaggagagaaaggggagaggcacgcca
....((((((.((.((.(((.((.(((((...(((((((((.((((((((.......((.(((.((((.(((....))).)))).....))))))))))))).)))))))))...))))))).)))...))))...))))))...

Structure

ccuu      --a  a  --a   c  a     uaa         g        uuaauga  u   ----a    a   a 
    ugugcc   cc cc   cuc cc ucccc   cccugcucu agggguuu       ag ggc     ucug agu u
    ||||||   || ||   ||| || |||||   ||||||||| ||||||||       || |||     |||| |||  
    gcacgg   gg gg   gag gg agggg   gggacggGG UUCCUAGG       UC CCG     AGAU ucg g
-acc      aga  -  aaa   a  -     cgg         G        -------  -   GUUAC    c   c 

Annotation confidence Not enough data

Genome context

chr16: 4539682-4539826 [-]

Mature eca-miR-9175

• Accession: MIMAT0034755
• Description: Equus caballus eca-miR-9175 mature miRNA
• Sequence: 81 - UAGACAUUGGCCCUGGAUCCUUGGG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545