miRBase entry: efu-mir-9230c

Stem-loop efu-mir-9230c


Accession
MI0028508
Description
Eptesicus fuscus efu-mir-9230c precursor miRNA


Sequence

35750 reads, 375.0 reads per million, 8 experiments
cUGACUGCUCUGAACUCCAGUUCcaggcuagacuguggggacacagacucauucggggagaAACUGGACUGUCUGGCAGCaggcaga
(((.((((((((.(((((((((((.((..((.(((((....))))).))...))..)))...))))))..)).))).))))).))).

Structure
-   A     -   A  --      ---   -a  -cu  a     g 
 cUG CUGCU CUG AC  UCCAGU   UCc  gg   ag cugug g
 ||| ||||| ||| ||  ||||||   |||  ||   || |||||  
 gac gaCGA GGU UG  AGGUCA   agg  cu   uc gacac g
a   g     C   C  UC      Aag   gg  uac  a     a 


Annotation confidence Low
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Genome context
JH977699.1: 2125229-2125315 [-]

Database links

Mature efu-miR-9230c-5p

Accession MIMAT0034837
Description Eptesicus fuscus efu-miR-9230c-5p mature miRNA
Sequence 2 - UGACUGCUCUGAACUCCAGUUC - 23
Evidence experimental
Illumina [1]

Mature efu-miR-9230c-3p

Accession MIMAT0058726
Description Eptesicus fuscus efu-miR-9230c-3p mature miRNA
Sequence 62 - AACUGGACUGUCUGGCAGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545