Stem-loop efu-mir-23b

Accession

MI0028583

Description

Eptesicus fuscus efu-mir-23b precursor miRNA

Sequence

254111 reads, 2804.0 reads per million, 8 experiments

ucuggcugcuUGGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaAAUCACAUUGCCAGGGAUUACCACGcaaccaugac
(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).)).

Structure

-  -   c   u   --          -  C      gugacu 
 uc ugg ugc UGG  GUUCCUGGCA UG UGAUUU      u
 || ||| ||| |||  |||||||||| || ||||||       
 ag acc acG ACC  UAGGGACCGU AC ACUAAa      a
c  u   a   C   AU          U  -      auuaga 

Annotation confidence High

Genome context

JH977714.1: 1770407-1770488 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-23b

Mature efu-miR-23b-5p

• Accession: MIMAT0058743
• Description: Eptesicus fuscus efu-miR-23b-5p mature miRNA
• Sequence: 11 - UGGGUUCCUGGCAUGCUGAUUU - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-23b-3p

• Accession: MIMAT0034899
• Description: Eptesicus fuscus efu-miR-23b-3p mature miRNA
• Sequence: 48 - AAUCACAUUGCCAGGGAUUACCACG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545