Stem-loop efu-mir-27b

Accession

MI0028584

Description

Eptesicus fuscus efu-mir-27b precursor miRNA

Sequence

3897240 reads, 34838.0 reads per million, 8 experiments

cugccgaggugcAGAGCUUAGCUGAUUGGUGAACagugacugguuuccgcuuuGUUCACAGUGGCUAAGUUCUGCACcugaagagaa
((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))....))..

Structure

--  gccg                 G    G       ugac   u 
  cu    aggugcAGAGCUUAGCU AUUG UGAACag    ugg  
  ||    ||||||||||||||||| |||| |||||||    ||| u
  ga    ucCACGUCUUGAAUCGG UGAC ACUUGuu    gcc  
aa  gaag                 -    -       --uc   u 

Annotation confidence High

Genome context

JH977714.1: 1770631-1770717 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-27b

Mature efu-miR-27b-5p

• Accession: MIMAT0058744
• Description: Eptesicus fuscus efu-miR-27b-5p mature miRNA
• Sequence: 13 - AGAGCUUAGCUGAUUGGUGAAC - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-27b-3p

• Accession: MIMAT0034900
• Description: Eptesicus fuscus efu-miR-27b-3p mature miRNA
• Sequence: 54 - GUUCACAGUGGCUAAGUUCUGCAC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545