Stem-loop efu-mir-215

Accession

MI0028610

Description

Eptesicus fuscus efu-mir-215 precursor miRNA

Sequence

4601 reads, 51.0 reads per million, 8 experiments

uguacaggaaAAUGACCUAUGAAUUGACAGACAguguggcuaagagugUCUGUCAUUUCUGUAGGCCAAUauucuguauauc
(((((((((...((.((((((((.(((((((((.(.(.....).).))))))))).))).))))).))...)))))))))..

Structure

--         aAA  A     -   U         g g g 
  uguacagga   UG CCUAU GAA UGACAGACA u u g
  |||||||||   || ||||| ||| ||||||||| | | c
  auaugucuu   AC GGAUG CUU ACUGUCUgu a a u
cu         aUA  C     U   U         g g a 

Annotation confidence High

Genome context

JH977666.1: 4371074-4371155 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-215

Mature efu-miR-215-5p

• Accession: MIMAT0034925
• Description: Eptesicus fuscus efu-miR-215-5p mature miRNA
• Sequence: 11 - AAUGACCUAUGAAUUGACAGACA - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-215-3p

• Accession: MIMAT0058761
• Description: Eptesicus fuscus efu-miR-215-3p mature miRNA
• Sequence: 49 - UCUGUCAUUUCUGUAGGCCAAU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545