Stem-loop efu-mir-330

Accession

MI0028613

Description

Eptesicus fuscus efu-mir-330 precursor miRNA

Sequence

6162 reads, 63.0 reads per million, 8 experiments

gaucacugccUCUCUGGGCCUGUGUCUUAGGCUcugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAGGcagcgcuccg
((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).))..

Structure

--  u a           --    -    U   AG    ugcaa 
  ga c cugccUCUCUG  GGCC UGUG CUU  GCUc     g
  || | |||||||||||  |||| |||| |||  ||||     a
  cu g gacGGAGAGAC  CCGG ACAC GAA  CGag     u
gc  c c           GU    C    -   -A    ccaac 

Annotation confidence High

Genome context

JH977799.1: 504906-504989 [+]

Mature efu-miR-330-5p

• Accession: MIMAT0058762
• Description: Eptesicus fuscus efu-miR-330-5p mature miRNA
• Sequence: 11 - UCUCUGGGCCUGUGUCUUAGGCU - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-330-3p

• Accession: MIMAT0034927
• Description: Eptesicus fuscus efu-miR-330-3p mature miRNA
• Sequence: 50 - GCAAAGCACACGGCCUGCAGAGAGG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545