Stem-loop efu-mir-342

Accession

MI0028651

Description

Eptesicus fuscus efu-mir-342 precursor miRNA

Sequence

26844 reads, 272.0 reads per million, 8 experiments

gcgcaaggugaGGGGUGCUAUCUGUGAUUGAGGGACauggcgcauagaauugUCUCACACAGAAAUCGCACCCGUCAccuuggccca
((.((((((((.((((((..((((((.....((((((...(.....)...)))))).))))))....)))))).))))))))))...

Structure

---  g        G      --UA      AUUGA      ugg g 
   gc caagguga GGGUGC    UCUGUG     GGGACa   c c
   || |||||||| ||||||    ||||||     ||||||   | a
   cg guuccACU CCCACG    AGACAC     CUCUgu   g u
acc  -        G      CUAA      ----A      uaa a 

Annotation confidence High

Genome context

JH977717.1: 1659627-1659713 [-]

Mature efu-miR-342-5p

• Accession: MIMAT0058783
• Description: Eptesicus fuscus efu-miR-342-5p mature miRNA
• Sequence: 12 - GGGGUGCUAUCUGUGAUUGAGGGAC - 36
• Evidence: experimental ; Illumina [1]

Mature efu-miR-342-3p

• Accession: MIMAT0034966
• Description: Eptesicus fuscus efu-miR-342-3p mature miRNA
• Sequence: 53 - UCUCACACAGAAAUCGCACCCGUCA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545