Stem-loop efu-mir-20

Accession

MI0028681

Description

Eptesicus fuscus efu-mir-20 precursor miRNA

Sequence

25869 reads, 300.0 reads per million, 8 experiments

ucuguagcacUAAAGUGCUUAUAGUGCAGGUAGUGuuuaguuaucuACUGCAUUAUGAGCACUUAAAGUacugcuagcu
...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).....

Structure

--ucu    c   -A                 G   UGuu 
     guag acU  AAGUGCUUAUAGUGCAG UAG    u
     |||| |||  ||||||||||||||||| |||    a
     cguc UGA  UUCACGAGUAUUACGUC Auc    g
ucgau    a   AA                 -   uauu 

Annotation confidence High

Genome context

JH977750.1: 95905-95983 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from efu-mir-20

Mature efu-miR-20-5p

• Accession: MIMAT0034996
• Description: Eptesicus fuscus efu-miR-20-5p mature miRNA
• Sequence: 11 - UAAAGUGCUUAUAGUGCAGGUAGUG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-20-3p

• Accession: MIMAT0058794
• Description: Eptesicus fuscus efu-miR-20-3p mature miRNA
• Sequence: 47 - ACUGCAUUAUGAGCACUUAAAGU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545