Stem-loop efu-mir-18

Accession

MI0028682

Description

Eptesicus fuscus efu-mir-18 precursor miRNA

Sequence

6516 reads, 70.0 reads per million, 8 experiments

cuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGUGaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguu
((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))..

Structure

--        u   --   U    C   U    A   -  aa u 
  cuuuuugu cUA  AGG GCAU UAG GCAG UAG UG  g a
  |||||||| |||  ||| |||| ||| |||| ||| ||  | g
  gaagaaua gGU  UCC CGUG AUC CGUC Auc ac  u a
uu        c   CU   U    A   C    -   u  ga u 

Annotation confidence High

Genome context

JH977750.1: 95596-95680 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from efu-mir-18

Mature efu-miR-18-5p

• Accession: MIMAT0034997
• Description: Eptesicus fuscus efu-miR-18-5p mature miRNA
• Sequence: 11 - UAAGGUGCAUCUAGUGCAGAUAGUG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-18-3p

• Accession: MIMAT0058795
• Description: Eptesicus fuscus efu-miR-18-3p mature miRNA
• Sequence: 52 - ACUGCCCUAAGUGCUCCUUCUG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545