Stem-loop efu-let-7f

Accession

MI0028702

Description

Eptesicus fuscus efu-let-7f precursor miRNA

Sequence

399413 reads, 4283.0 reads per million, 8 experiments

ucuaucagagUGAGGUAGUAGAUUGUAUAGUUGUGggguaguuauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcugcggaguag
(((..(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))).)))....

Structure

----   au   a U                       ---------       u 
    ucu  cag g GAGGUAGUAGAUUGUAUAGUUGU         Gggguag u
    |||  ||| | |||||||||||||||||||||||         ||||||| a
    agg  guc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
gaug   -c   - C                       gaggacuug       u 

Annotation confidence High

Genome context

JH977714.1: 1024362-1024459 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-let-7f

Mature efu-let-7f-5p

• Accession: MIMAT0035017
• Description: Eptesicus fuscus efu-let-7f-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGAUUGUAUAGUUGUG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-let-7f-3p

• Accession: MIMAT0058812
• Description: Eptesicus fuscus efu-let-7f-3p mature miRNA
• Sequence: 67 - CUAUACAAUCUAUUGCCUUCC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545