miRBase entry: efu-mir-376

Stem-loop efu-mir-376


Accession
MI0028711
Description
Eptesicus fuscus efu-mir-376 precursor miRNA


Sequence

2039 reads, 43.0 reads per million, 8 experiments
uauuuaaaagGCGGAUAUUCCUUCUAUGUUUauguuauguaccauuaAACGUAGAGGAAAUUCCACCUuuucaguauc
((((.((((((.(((..(((((.(((((((((((........)).))))))))))))))..))).)))))).))))..

Structure
--    u      C   UA     U         -  uua 
  uauu aaaagG GGA  UUCCU CUAUGUUUa ug   u
  |||| |||||| |||  ||||| ||||||||| ||    
  auga uuuUCC CCU  AAGGA GAUGCAAau ac   g
cu    c      A   UA     -         u  cau 


Annotation confidence High
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Genome context
JH977717.1: 855568-855645 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from efu-mir-376
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-376-5p

Accession MIMAT0035026
Description Eptesicus fuscus efu-miR-376-5p mature miRNA
Sequence 11 - GCGGAUAUUCCUUCUAUGUUU - 31
Evidence experimental
Illumina [1]

Mature efu-miR-376-3p

Accession MIMAT0058819
Description Eptesicus fuscus efu-miR-376-3p mature miRNA
Sequence 48 - AACGUAGAGGAAAUUCCACCU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545