Stem-loop efu-mir-494

Accession

MI0028713

Description

Eptesicus fuscus efu-mir-494 precursor miRNA

Sequence

155 reads, 4.0 reads per million, 8 experiments

cucgaaggAGAGGUUGUCCGUGAUGUGUUcucuuuauugaugaUGAAACAUACACGGGAAACCUCUuuuuuaguau
...((((((((((((.((((((.((((((.((.(((....))).)))))))))))))).)))))))))))).....

Structure

--cuc            G      A      c  u   u 
     gaaggAGAGGUU UCCGUG UGUGUU uc uua u
     |||||||||||| |||||| |||||| || |||  
     uuuuuUCUCCAA GGGCAC AUACAA AG agu g
uauga            A      -      -  U   a 

Annotation confidence High

Genome context

JH977717.1: 863147-863222 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from efu-mir-494

Mature efu-miR-494-5p

• Accession: MIMAT0058821
• Description: Eptesicus fuscus efu-miR-494-5p mature miRNA
• Sequence: 9 - AGAGGUUGUCCGUGAUGUGUU - 29
• Evidence: experimental ; Illumina [1]

Mature efu-miR-494-3p

• Accession: MIMAT0035028
• Description: Eptesicus fuscus efu-miR-494-3p mature miRNA
• Sequence: 44 - UGAAACAUACACGGGAAACCUCU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545