Stem-loop efu-mir-411

Accession

MI0028714

Description

Eptesicus fuscus efu-mir-411 precursor miRNA

Sequence

2505 reads, 65.0 reads per million, 8 experiments

auguggagagACGGUGGACCGUAGAGCAUGCGUGccauuugugacgUAUGUGCUAUGGUCCACUCAUucucggcauca
((((.(((((..((((((((((((.((((((((..(....)..)))))))).))))))))))))..))))).))))..

Structure

--    g     AC            A        Gc a 
  augu gagag  GGUGGACCGUAG GCAUGCGU  c u
  |||| |||||  |||||||||||| ||||||||  |  
  uacg cucuU  UCACCUGGUAUC UGUAUgca  g u
ac    g     AC            G        gu u 

Annotation confidence High

Genome context

JH977717.1: 866940-867017 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from efu-mir-411

Mature efu-miR-411-5p

• Accession: MIMAT0035029
• Description: Eptesicus fuscus efu-miR-411-5p mature miRNA
• Sequence: 11 - ACGGUGGACCGUAGAGCAUGCGUG - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-411-3p

• Accession: MIMAT0058822
• Description: Eptesicus fuscus efu-miR-411-3p mature miRNA
• Sequence: 47 - UAUGUGCUAUGGUCCACUCAU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545