Stem-loop efu-mir-485

Accession

MI0028723

Description

Eptesicus fuscus efu-mir-485 precursor miRNA

Sequence

420 reads, 13.0 reads per million, 8 experiments

guacuuggagAGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuaguauca
(((((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))))..

Structure

--     u         CU       -    A    auuc 
  guacu ggagAGAGG  GGCCGUG AUGA UUCg    a
  ||||| |||||||||  ||||||| |||| ||||    u
  uauga uuUCUCUCC  UCGGCAC UACU Gagc    c
ac     u         UC       A    -    gaaa 

Annotation confidence High

Genome context

JH977717.1: 841215-841293 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from efu-mir-485

Mature efu-miR-485-5p

• Accession: MIMAT0058826
• Description: Eptesicus fuscus efu-miR-485-5p mature miRNA
• Sequence: 11 - AGAGGCUGGCCGUGAUGAAUUC - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-485-3p

• Accession: MIMAT0035038
• Description: Eptesicus fuscus efu-miR-485-3p mature miRNA
• Sequence: 48 - GUCAUACACGGCUCUCCUCUCU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545