Stem-loop efu-mir-409

Accession

MI0028726

Description

Eptesicus fuscus efu-mir-409 precursor miRNA

Sequence

1339 reads, 28.0 reads per million, 8 experiments

uacucggggagAGGUUACCCGAGCAACUUUGCAUccagacgaCGAAUGUUGCUCGGUGAACCCCUUuucgguauca
(((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))))...

Structure

---   u       A    AC         -    - AUc 
   uac cggggag GGUU  CCGAGCAAC UUUG C   c
   ||| ||||||| ||||  ||||||||| |||| |    
   aug gcuuUUC CCAA  GGCUCGUUG AAGC g   a
acu   -       C    GU         U    a cag 

Annotation confidence Medium

Genome context

JH977717.1: 833062-833137 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-409

Mature efu-miR-409-5p

• Accession: MIMAT0058829
• Description: Eptesicus fuscus efu-miR-409-5p mature miRNA
• Sequence: 12 - AGGUUACCCGAGCAACUUUGCAU - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-409-3p

• Accession: MIMAT0035041
• Description: Eptesicus fuscus efu-miR-409-3p mature miRNA
• Sequence: 43 - CGAAUGUUGCUCGGUGAACCCCUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545