Stem-loop efu-mir-34c

Accession

MI0028730

Description

Eptesicus fuscus efu-mir-34c precursor miRNA

Sequence

1384526 reads, 52968.0 reads per million, 6 experiments

agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACUACACGGCCAAGUAaaaagauuug
.((((..(((((.(((.((((((((((.((((((.((....)).)))))))))))))))).))).)))))..))))...

Structure

--a    ag     A   A          C      C  a 
   gucu  uuacu GGC GUGUAGUUAG UGAUUG ua u
   ||||  ||||| ||| |||||||||| |||||| ||  
   uaga  aAUGA CCG CACAUCAAUC ACUAAc au a
guu    aa     A   G          -      c  g 

Annotation confidence High

Genome context

JH977889.1: 780248-780326 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-34c

Mature efu-miR-34c-5p

• Accession: MIMAT0058830
• Description: Eptesicus fuscus efu-miR-34c-5p mature miRNA
• Sequence: 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-34c-3p

• Accession: MIMAT0035046
• Description: Eptesicus fuscus efu-miR-34c-3p mature miRNA
• Sequence: 46 - AAUCACUAACUACACGGCCAAGUA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545