Stem-loop efu-mir-16-1

Accession

MI0028779

Description

Eptesicus fuscus efu-mir-16-1 precursor miRNA

Literature search

1 open access papers mention efu-mir-16-1
(1 sentences)

Sequence

414814 reads, 3531.0 reads per million, 8 experiments

agcagugccuUAGCAGCACGUAAAUAUUGGCGUuaagauucuaaauuaucuCCAGUAUUAACUGUGCUGCUGAAguaagguuga
(((..(((.((((((((((((.((((((((.....((((........)))))))))))).)).)))))))))).)))..)))..

Structure

--   ag   c          -  A        CGUua    ucu 
  agc  ugc uUAGCAGCAC GU AAUAUUGG     agau   a
  |||  ||| |||||||||| || ||||||||     ||||    
  uug  aug AGUCGUCGUG CA UUAUGACC     ucua   a
ag   ga   A          U  A        -----    uua 

Annotation confidence High

Genome context

JH977684.1: 6483904-6483987 [+]

Mature efu-miR-16-5p

• Accession: MIMAT0035087
• Description: Eptesicus fuscus efu-miR-16-5p mature miRNA
• Sequence: 11 - UAGCAGCACGUAAAUAUUGGCGU - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-16-1-3p

• Accession: MIMAT0058858
• Description: Eptesicus fuscus efu-miR-16-1-3p mature miRNA
• Sequence: 52 - CCAGUAUUAACUGUGCUGCUGAA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545