Stem-loop efu-mir-193b

Accession

MI0028794

Description

Eptesicus fuscus efu-mir-193b precursor miRNA

Sequence

70811 reads, 720.0 reads per million, 8 experiments

gucccagaauCGGGGUUUUGAGGGCGAGAUGAGUuuauguuuuauccAACUGGCCCACAAAGUCCCGCUUuugggguca
(((((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).)))))))).).

Structure

- -        u          A    G  A  A  uua 
 g ucccagaa CGGGGUUUUG GGGC AG UG GU   u
 | |||||||| |||||||||| |||| || || ||   g
 c gggguuUU GCCCUGAAAC CCCG UC Ac ua   u
a u        C          A    G  A  c  uuu 

Annotation confidence High

Genome context

JH977625.1: 18505696-18505774 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-193b

Mature efu-miR-193b-5p

• Accession: MIMAT0035100
• Description: Eptesicus fuscus efu-miR-193b-5p mature miRNA
• Sequence: 11 - CGGGGUUUUGAGGGCGAGAUGAGU - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-193b-3p

• Accession: MIMAT0058868
• Description: Eptesicus fuscus efu-miR-193b-3p mature miRNA
• Sequence: 48 - AACUGGCCCACAAAGUCCCGCUU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545