Stem-loop efu-mir-143

Accession

MI0028823

Description

Eptesicus fuscus efu-mir-143 precursor miRNA

Literature search

1 open access papers mention efu-mir-143
(1 sentences)

Sequence

513568 reads, 26526.0 reads per million, 8 experiments

cccagccugaGGUGCAGUGCUGCAUCUCUGGucaguugggaGUCUGAGAUGAAGCACUGUAGCUCaggaagggag
(((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..)))..

Structure

--   ag      G         G      U  -  ag 
  ccc  ccugaG UGCAGUGCU CAUCUC GG uc  u
  |||  |||||| ||||||||| |||||| || ||   
  ggg  ggaCUC AUGUCACGA GUAGAG CU ag  u
ga   aa      G         A      U  G  gg 

Annotation confidence High

Genome context

JH977686.1: 996147-996221 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-143

Mature efu-miR-143-5p

• Accession: MIMAT0058878
• Description: Eptesicus fuscus efu-miR-143-5p mature miRNA
• Sequence: 11 - GGUGCAGUGCUGCAUCUCUGG - 31
• Evidence: experimental ; Illumina [1]

Mature efu-miR-143-3p

• Accession: MIMAT0035123
• Description: Eptesicus fuscus efu-miR-143-3p mature miRNA
• Sequence: 42 - GUCUGAGAUGAAGCACUGUAGCUC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545