Stem-loop efu-mir-424

Accession

MI0028827

Description

Eptesicus fuscus efu-mir-424 precursor miRNA

Sequence

12923 reads, 195.0 reads per million, 8 experiments

cuaggggauaCAGCAGCAAUUCAUGUUUUGAAguucuuuacaaugguuCAAAACGUGAGGCGCUGCUAUAcccccucgag
..(((((.((.((((((..(((((((((((((.(..........).)))))))))))))..)))))).)).)))))....

Structure

--cu     a  C      AA             g ucuu 
    agggg ua AGCAGC  UUCAUGUUUUGAA u    u
    ||||| || ||||||  ||||||||||||| |     
    ucccc AU UCGUCG  GAGUGCAAAACuu g    a
gagc     c  A      CG             g uaac 

Annotation confidence High

Genome context

JH977765.1: 652615-652694 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-424

Mature efu-miR-424-5p

• Accession: MIMAT0035126
• Description: Eptesicus fuscus efu-miR-424-5p mature miRNA
• Sequence: 11 - CAGCAGCAAUUCAUGUUUUGAA - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-424-3p

• Accession: MIMAT0058879
• Description: Eptesicus fuscus efu-miR-424-3p mature miRNA
• Sequence: 49 - CAAAACGUGAGGCGCUGCUAUA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545