miRBase entry: efu-mir-181c

Stem-loop efu-mir-181c

Accession

MI0028834

Description

Eptesicus fuscus efu-mir-181c precursor miRNA

Sequence

ggcuugggggAACAUUCAACCUGUCGGUGAGUUUgggcagcucaggcaaaccaucgaccguugaguggaccccgaggccug
(((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).)))))..

Structure

--     g    AA        CU       A     ggca 
  ggcuu gggg  CAUUCAAC  GUCGGUG GUUUg    g
  ||||| ||||  ||||||||  ||||||| |||||    c
  ccgga cccc  gugaguug  cagcuac caaac    u
gu     g    ag        -c       -     ggac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH977789.1: 1151710-1151790 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-181c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-181c

Accession	MIMAT0035132
Description	Eptesicus fuscus efu-miR-181c mature miRNA
Sequence	11 - AACAUUCAACCUGUCGGUGAGUUU - 34
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545