Stem-loop efu-mir-30c

Accession

MI0028838

Description

Eptesicus fuscus efu-mir-30c precursor miRNA

Sequence

600959 reads, 6403.0 reads per million, 8 experiments

gccguagugugUGUAAACAUCCUACACUCUCAGCUgugagcucaagguggCUGGGAGAGGGUUGUUUACUCCUucugccaugg
...((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))).....

Structure

--gcc    ugu U       U   ACA         guga   c 
     guag   g GUAAACA CCU   CUCUCAGCU    gcu  
     ||||   | ||||||| |||   |||||||||    ||| a
     cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
gguac    uUC U       U   --A         ----   a 

Annotation confidence High

Genome context

JH977676.1: 8259557-8259639 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-30c

Mature efu-miR-30c-5p

• Accession: MIMAT0058886
• Description: Eptesicus fuscus efu-miR-30c-5p mature miRNA
• Sequence: 12 - UGUAAACAUCCUACACUCUCAGCU - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-30c-3p

• Accession: MIMAT0035135
• Description: Eptesicus fuscus efu-miR-30c-3p mature miRNA
• Sequence: 51 - CUGGGAGAGGGUUGUUUACUCCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545