Stem-loop efu-mir-30e

Accession

MI0028839

Description

Eptesicus fuscus efu-mir-30e precursor miRNA

Sequence

634643 reads, 8584.0 reads per million, 8 experiments

ucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaagguguucagaggaGCUUUCAGUCGGAUGUUUACAGCggcaggcugc
..((((((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))....

Structure

--uc      a            UU           g aag u 
    uuugcu cUGUAAACAUCC  GACUGGAAGCU u   g g
    |||||| ||||||||||||  ||||||||||| |   |  
    ggacgg GACAUUUGUAGG  CUGACUUUCGa g   c u
cguc      C            --           g aga u 

Annotation confidence High

Genome context

JH977676.1: 8262625-8262708 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-30e

Mature efu-miR-30e-5p

• Accession: MIMAT0058887
• Description: Eptesicus fuscus efu-miR-30e-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUUGACUGGAAGCU - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-30e-3p

• Accession: MIMAT0035136
• Description: Eptesicus fuscus efu-miR-30e-3p mature miRNA
• Sequence: 52 - GCUUUCAGUCGGAUGUUUACAGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545