Stem-loop efu-mir-1842

Accession

MI0028840

Description

Eptesicus fuscus efu-mir-1842 precursor miRNA

Sequence

66178 reads, 621.0 reads per million, 8 experiments

ggugcugacgUUGGCUCUGCGAGGUCGGCUCAAGgugggucuggauauugAGCAGGCCUGUCAGGGCGUUGUcacccacacc
((((.(((((...((((((..(((((.((((((.((........)).)))))).)))))..))))))..)))))....))))

Structure

    ---c     UUG      CG     G      G  ggg 
ggug    ugacg   GCUCUG  AGGUC GCUCAA gu   u
||||    |||||   ||||||  ||||| |||||| ||    
ccac    acUGU   CGGGAC  UCCGG CGAguu ua   c
    accc     -UG      UG     A      a  ggu 

Annotation confidence High

Genome context

JH977648.1: 942520-942601 [-]

Mature efu-miR-1842-5p

• Accession: MIMAT0035137
• Description: Eptesicus fuscus efu-miR-1842-5p mature miRNA
• Sequence: 11 - UUGGCUCUGCGAGGUCGGCUCAAG - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-1842-3p

• Accession: MIMAT0058888
• Description: Eptesicus fuscus efu-miR-1842-3p mature miRNA
• Sequence: 51 - AGCAGGCCUGUCAGGGCGUUGU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545