miRBase entry: efu-mir-188

Stem-loop efu-mir-188

Accession

MI0028856

Description

Eptesicus fuscus efu-mir-188 precursor miRNA

Sequence

cccucucucaCAUCCCUUGCAUGGUGGAGGGUgcgcuugcugaaaaccccucccacaugcaggguuugcaggauggugag
......(((((((((((((((((..((((((....(.....).....))))))..)))))))).......)))).)))))

Structure

cccucu     -    -------        GU      -Ugcg u 
      cucaC AUCC       CUUGCAUG  GGAGGG     c u
      ||||| ||||       ||||||||  ||||||     | g
      gagug uagg       ggacguac  ccuccc     g c
------     g    acguuug        ac      caaaa u

Annotation confidence Not enough data

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Genome context

JH977797.1: 837233-837312 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-188

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-188

Accession	MIMAT0035151
Description	Eptesicus fuscus efu-miR-188 mature miRNA
Sequence	11 - CAUCCCUUGCAUGGUGGAGGGU - 32
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545