Stem-loop efu-mir-188

Accession

MI0028856

Description

Eptesicus fuscus efu-mir-188 precursor miRNA

Sequence

1304 reads, 14.0 reads per million, 8 experiments

cccucucucaCAUCCCUUGCAUGGUGGAGGGUgcgcuugcugaaaacccCUCCCACAUGCAGGGUUUGCAggauggugag
......(((((((((((((((((..((((((....(.....).....))))))..)))))))).......)))).)))))

Structure

cccucu     -    -------        GU      -Ugcg u 
      cucaC AUCC       CUUGCAUG  GGAGGG     c u
      ||||| ||||       ||||||||  ||||||     | g
      gagug uagg       GGACGUAC  CCUCcc     g c
------     g    ACGUUUG        AC      caaaa u 

Annotation confidence Medium

Genome context

JH977797.1: 837233-837312 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-188

Mature efu-miR-188-5p

• Accession: MIMAT0035151
• Description: Eptesicus fuscus efu-miR-188-5p mature miRNA
• Sequence: 11 - CAUCCCUUGCAUGGUGGAGGGU - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-188-3p

• Accession: MIMAT0058896
• Description: Eptesicus fuscus efu-miR-188-3p mature miRNA
• Sequence: 50 - CUCCCACAUGCAGGGUUUGCA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545