miRBase entry: efu-mir-500

Stem-loop efu-mir-500

Accession

MI0028857

Description

Eptesicus fuscus efu-mir-500 precursor miRNA

Sequence

uggcucccucacucuaauccuugcuaccugggugagagugcuuucugaaugcAAUGCACCUGGGCAAGGAUUCUGAgaggggcagc
..(((((((((....(((((((((...(((((((....(((.........)))...)))))))))))))))).)))).)))))...

Structure

-ug     -    cucu         uac       agag   uuu 
   gcucc cuca    aauccuugc   cugggug    ugc   c
   ||||| ||||    |||||||||   |||||||    |||   u
   cgggg gAGU    UUAGGAACG   GGUCCAC    Acg   g
cga     a    ---C         ---       -GUA   uaa

Annotation confidence Not enough data

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Genome context

JH977797.1: 842978-843063 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-500

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-500

Accession	MIMAT0035152
Description	Eptesicus fuscus efu-miR-500 mature miRNA
Sequence	53 - AAUGCACCUGGGCAAGGAUUCUGA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545