Stem-loop efu-mir-660

Accession

MI0028859

Description

Eptesicus fuscus efu-mir-660 precursor miRNA

Sequence

506 reads, 23.0 reads per million, 8 experiments

ccuucucccaUACCCAUUGCAUAUCGGAGUUGUgaauucucaaagcACCUCCUGUGUGCAUGGAUUAcaggaggguga
((((((.......((((.((((((.((((.(((...........))).)))).)))))))))).....))))))....

Structure

----      cccaUAC    U      C    U   gaau 
    ccuucu       CCAU GCAUAU GGAG UGU    u
    ||||||       |||| |||||| |||| |||    c
    ggagga       GGUA CGUGUG CCUC Acg    u
agug      --cAUUA    -      U    C   aaac 

Annotation confidence High

Genome context

JH977797.1: 845067-845144 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-660

Mature efu-miR-660-5p

• Accession: MIMAT0035154
• Description: Eptesicus fuscus efu-miR-660-5p mature miRNA
• Sequence: 11 - UACCCAUUGCAUAUCGGAGUUGU - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-660-3p

• Accession: MIMAT0058899
• Description: Eptesicus fuscus efu-miR-660-3p mature miRNA
• Sequence: 47 - ACCUCCUGUGUGCAUGGAUUA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545