Stem-loop efu-mir-502

Accession

MI0028860

Description

Eptesicus fuscus efu-mir-502 precursor miRNA

Sequence

3477 reads, 67.0 reads per million, 8 experiments

cucccccucucUAAUCCUUGCUACCUGGGUGAGAGUgcugucagaaugcAAUGCACCUGGGCAAGGAUUCCGAGagugagagcu
(((.(.(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).).)))..

Structure

--   c c     -U         UAC       AGAG   ugu 
  cuc c cucuc  AAUCCUUGC   CUGGGUG    Ugc   c
  ||| | |||||  |||||||||   |||||||    |||   a
  gag g gaGAG  UUAGGAACG   GGUCCAC    Acg   g
uc   a u     CC         ---       -GUA   uaa 

Annotation confidence High

Genome context

JH977797.1: 841188-841271 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-502

Mature efu-miR-502-5p

• Accession: MIMAT0058900
• Description: Eptesicus fuscus efu-miR-502-5p mature miRNA
• Sequence: 12 - UAAUCCUUGCUACCUGGGUGAGAGU - 36
• Evidence: experimental ; Illumina [1]

Mature efu-miR-502-3p

• Accession: MIMAT0035155
• Description: Eptesicus fuscus efu-miR-502-3p mature miRNA
• Sequence: 50 - AAUGCACCUGGGCAAGGAUUCCGAG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545