Stem-loop efu-mir-192

Accession

MI0028863

Description

Eptesicus fuscus efu-mir-192 precursor miRNA

Sequence

93246 reads, 942.0 reads per million, 8 experiments

gcacagggcuCUGACCUAUGAAUUGACAGCCAGUGcucuugucuccucucuggCUGCCAAUUCCAUAGGUCACAGguauguucgc
(.(((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).))).)..

Structure

-- c   g g  C         -     A       UGcucuu 
  g aca g cu UGACCUAUG AAUUG CAGCCAG       g
  | ||| | || ||||||||| ||||| |||||||        
  c ugu u GA ACUGGAUAC UUAAC GUCgguc       u
cg u   a g  C         C     C       ucuccuc 

Annotation confidence High

Genome context

JH977826.1: 1052626-1052710 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-192

Mature efu-miR-192-5p

• Accession: MIMAT0035158
• Description: Eptesicus fuscus efu-miR-192-5p mature miRNA
• Sequence: 11 - CUGACCUAUGAAUUGACAGCCAGUG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-192-3p

• Accession: MIMAT0058901
• Description: Eptesicus fuscus efu-miR-192-3p mature miRNA
• Sequence: 54 - CUGCCAAUUCCAUAGGUCACAG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545