Stem-loop efu-mir-27a

Accession

MI0028869

Description

Eptesicus fuscus efu-mir-27a precursor miRNA

Sequence

1341393 reads, 11762.0 reads per million, 8 experiments

ccuggggagcAGGGCUUAGCUGCUUGUGAGCAgggucugcaccaagucaugUUCACAGUGGCUAAGUUCCGCcccccggagc
.((((((.((.(((((((((((((.(((((((.((.((......)))).)))))))))))))))))))).)).))))))...

Structure

--c      a  A             U       g  u  gc 
   cugggg gc GGGCUUAGCUGCU GUGAGCA gg cu  a
   |||||| || ||||||||||||| ||||||| || ||   
   ggcccc CG CUUGAAUCGGUGA CACUUgu cu ga  c
cga      c  C             -       a  -  ac 

Annotation confidence High

Genome context

JH977789.1: 1180697-1180778 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-27a

Mature efu-miR-27a-5p

• Accession: MIMAT0035162
• Description: Eptesicus fuscus efu-miR-27a-5p mature miRNA
• Sequence: 11 - AGGGCUUAGCUGCUUGUGAGCA - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-27a-3p

• Accession: MIMAT0058907
• Description: Eptesicus fuscus efu-miR-27a-3p mature miRNA
• Sequence: 52 - UUCACAGUGGCUAAGUUCCGC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545