miRBase entry: efu-mir-506

Stem-loop efu-mir-506


Accession
MI0028895
Description
Eptesicus fuscus efu-mir-506 precursor miRNA


Sequence

23954 reads, 1810.0 reads per million, 3 experiments
uucagugcccUACUCAGGAAGGCAUCAUUCACAuaaauugauacaUGAAUGGCACCUUCUGAGUAGCgcaaugugca
..((.(((.((((((((.((((..(((((((..((......))..)))))))..)))))))))))).))).))....

Structure
--uu  g   c        G    CA       CA  aa 
    ca ugc cUACUCAG AAGG  UCAUUCA  ua  u
    || ||| |||||||| ||||  |||||||  ||   
    gu acg GAUGAGUC UUCC  GGUAAGU  au  u
acgu  a   C        -    AC       ac  ag 


Annotation confidence High
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Genome context
JH977855.1: 594657-594733 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from efu-mir-506
Name Accession Chromosome Start End Strand Confidence




Database links

Mature efu-miR-506-5p

Accession MIMAT0035183
Description Eptesicus fuscus efu-miR-506-5p mature miRNA
Sequence 11 - UACUCAGGAAGGCAUCAUUCACA - 33
Evidence experimental
Illumina [1]

Mature efu-miR-506-3p

Accession MIMAT0058918
Description Eptesicus fuscus efu-miR-506-3p mature miRNA
Sequence 46 - UGAAUGGCACCUUCUGAGUAGC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545