Stem-loop efu-let-7e

Accession

MI0028898

Description

Eptesicus fuscus efu-let-7e precursor miRNA

Sequence

82361 reads, 826.0 reads per million, 8 experiments

ccccccgggcUGAGGUAGGAGGUUGUAUAGUUGAggaggacacccacggagaucaCUAUACGGCCUCCUAGCUUUCCccaggcugcg
...((.(((..(((.((((((((((((((((.((...(........).....)))))))))))))))))).)))..))).)).....

Structure

--ccc  c   cU   G                U  --gga gac 
     cc ggg  GAG UAGGAGGUUGUAUAGU GA     g   a
     || |||  ||| |||||||||||||||| ||     |    
     gg ccC  UUC AUCCUCCGGCAUAUCa cu     c   c
gcguc  a   CU   G                -  agagg acc 

Annotation confidence High

Genome context

JH977711.1: 794288-794374 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-let-7e

Mature efu-let-7e-5p

• Accession: MIMAT0035186
• Description: Eptesicus fuscus efu-let-7e-5p mature miRNA
• Sequence: 11 - UGAGGUAGGAGGUUGUAUAGUUGA - 34
• Evidence: experimental ; Illumina [1]

Mature efu-let-7e-3p

• Accession: MIMAT0058921
• Description: Eptesicus fuscus efu-let-7e-3p mature miRNA
• Sequence: 56 - CUAUACGGCCUCCUAGCUUUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545