Stem-loop efu-mir-15

Accession

MI0028900

Description

Eptesicus fuscus efu-mir-15 precursor miRNA

Sequence

48172 reads, 461.0 reads per million, 8 experiments

uaaaguacugUAGCAGCACAUCAUGGUUUACAuacuauagucaagaugCGAAUCAUUAUUUGCUGCUCUAgaaauuuaag
((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...))))..

Structure

--    gua   U       C  C       A   a  au 
  uaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
  ||||   ||| ||||||| || ||||||| ||| ||  g
  auuu   gAU UCGUCGU UA UACUAAG gua ga  u
ga    aaa   C       U  U       C   -  ac 

Annotation confidence High

Genome context

JH977627.1: 6222869-6222948 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-15

Mature efu-miR-15-5p

• Accession: MIMAT0035188
• Description: Eptesicus fuscus efu-miR-15-5p mature miRNA
• Sequence: 11 - UAGCAGCACAUCAUGGUUUACA - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-15-3p

• Accession: MIMAT0058922
• Description: Eptesicus fuscus efu-miR-15-3p mature miRNA
• Sequence: 49 - CGAAUCAUUAUUUGCUGCUCUA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545