Stem-loop efu-mir-16-2

Accession

MI0028901

Description

Eptesicus fuscus efu-mir-16-2 precursor miRNA

Literature search

1 open access papers mention efu-mir-16-2
(1 sentences)

Sequence

407446 reads, 3472.0 reads per million, 8 experiments

uguuccgcucUAGCAGCACGUAAAUAUUGGCGUagugaaauaaacauuaaacACCAAUAUUAUUGUGCUGCUUUagcgugacagg
((((.((((..(((((((((..((((((((.((((((.......))))..)).))))))))..)))))))))..)))).))))..

Structure

--    c    cU         UA        C  --    aa 
  uguu cgcu  AGCAGCACG  AAUAUUGG GU  agug  a
  |||| ||||  |||||||||  |||||||| ||  ||||  u
  acag gcga  UCGUCGUGU  UUAUAACC ca  uuac  a
gg    u    UU         UA        A  aa    aa 

Annotation confidence High

Genome context

JH977627.1: 6223011-6223095 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-16-2

Mature efu-miR-16-5p

• Accession: MIMAT0035087
• Description: Eptesicus fuscus efu-miR-16-5p mature miRNA
• Sequence: 11 - UAGCAGCACGUAAAUAUUGGCGU - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-16-2-3p

• Accession: MIMAT0058859
• Description: Eptesicus fuscus efu-miR-16-2-3p mature miRNA
• Sequence: 53 - ACCAAUAUUAUUGUGCUGCUUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545