Stem-loop efu-mir-339

Accession

MI0028902

Description

Eptesicus fuscus efu-mir-339 precursor miRNA

Sequence

51969 reads, 555.0 reads per million, 8 experiments

agccgcgcUCCCUGUCCUCCAGGAGCUCACcugcguccggccgUGAGCGCCUCGGGGCCAGAGCccgcgucugc
((.((((..(.(((.((((.(((.((((((..((.....)).)))))).))).)))).))).)..)))).))..

Structure

--  c    cU C   U    C   A      cu  g 
  ag cgcg  C CUG CCUC AGG GCUCAC  gc u
  || ||||  | ||| |||| ||| ||||||  || c
  uc gcgc  G GAC GGGG UCC CGAGUg  cg c
cg  u    cC A   C    C   G      -c  g 

Annotation confidence High

Genome context

JH977738.1: 3242529-3242602 [+]

Mature efu-miR-339-5p

• Accession: MIMAT0058923
• Description: Eptesicus fuscus efu-miR-339-5p mature miRNA
• Sequence: 9 - UCCCUGUCCUCCAGGAGCUCAC - 30
• Evidence: experimental ; Illumina [1]

Mature efu-miR-339-3p

• Accession: MIMAT0035189
• Description: Eptesicus fuscus efu-miR-339-3p mature miRNA
• Sequence: 44 - UGAGCGCCUCGGGGCCAGAGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545