miRBase entry: xtr-mir-428b

Stem-loop xtr-mir-428b

Accession

MI0029001

Description

Xenopus tropicalis xtr-mir-428b precursor miRNA

Sequence

cugggcucacagcagccaaacagaagcucugucuugugacucucuauGAGAAAGUGCUUCUCGUUCGGCUGAuuugggcaccgggaaaucgucag
(((((((((...(((((.(((((((((.((.(((((((......))))))).)).)))))).))).)))))...))))).))))...........

Structure

-----------    -     cag     a   -      u  g       ac 
           cugg gcuca   cagcc aac agaagc cu ucuugug  u
           |||| |||||   ||||| ||| |||||| || |||||||   
           ggcc cgggu   GUCGG UUG UCUUCG GA AGAGuau  c
gacugcuaaag    a     uuA     C   C      U  A       cu

Annotation confidence Not enough data

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Genome context

KV460579.1: 115024-115118 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-428b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-428b

Accession	MIMAT0035362
Description	Xenopus tropicalis xtr-miR-428b mature miRNA
Sequence	48 - GAGAAAGUGCUUCUCGUUCGGCUGA - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24065776
Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
"Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS"
"Genome Res (2014) 24:96-106