Stem-loop sly-MIR319c

Accession

MI0029099

Description

Solanum lycopersicum sly-MIR319c precursor miRNA

Literature search

24 open access papers mention sly-MIR319c
(148 sentences)

Sequence

1150031 reads, 34554.0 reads per million, 82 experiments

ggaaugguccaagAGAGCUUCCUUCAGCCCACUCAcggaggagaaaugggguugaauuagcugccgacucauucauccaaccacucaguagaaaggauagguuuugugcuacugugauugagugaaugaugcgggagauaguuuucuaucccucucuuuccuugcUUGGACUGAAGGGAGCUCCuuuuccccauu
..(((((...(((.(((((((((((((.(((..((.((((((((...(((((.((((((.((.(((..((((((((.(((.(((..((((.((((......)))).))))...))).))).))))))))..))).)).))))))...))))))))).)))).))..))).))))))))))))))))....)))))

Structure

gg     -ucc   A             C   CU  c    -    aau     --u      g  g   ac        c   c   -uc    g    ga 
  aaugg    aag GAGCUUCCUUCAG CCA  CA ggag gaga   ggggu   gaauua cu ccg  ucauucau caa cac   agua aaag  u
  |||||    ||| ||||||||||||| |||  || |||| ||||   |||||   |||||| || |||  |||||||| ||| |||   |||| ||||   
  uuacc    uuC CUCGAGGGAAGUC GGU  gu ccuu cucu   cccua   uuugau ga ggc  aguaagug guu gug   ucgu uuuu  a
--     ccuu   -             A   Uc  u    u    ---     ucu      a  g   gu        a   a   uca    g    gg 

Annotation confidence High

Genome context

chr3: 56451852-56452046 [+]

Mature sly-miR319c-5p

• Accession: MIMAT0035431
• Description: Solanum lycopersicum sly-miR319c-5p mature miRNA
• Sequence: 14 - AGAGCUUCCUUCAGCCCACUCA - 35
• Evidence: experimental ; Illumina [1]

Mature sly-miR319c-3p

• Accession: MIMAT0035432
• Description: Solanum lycopersicum sly-miR319c-3p mature miRNA
• Sequence: 166 - UUGGACUGAAGGGAGCUCC - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739