miRBase entry: sly-MIR319c

Stem-loop sly-MIR319c


Accession
MI0029099
Description
Solanum lycopersicum sly-MIR319c precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
22 open access papers mention sly-MIR319c
(152 sentences)

Sequence

ggaaugguccaagAGAGCUUCCUUCAGCCCACUCacggaggagaaaugggguugaauuagcugccgacucauucauccaaccacucaguagaaaggauagguuuugugcuacugugauugagugaaugaugcgggagauaguuuucuaucccucucuuuccuugcUUGGACUGAAGGGAGCUCCUUuuccccauu
..(((((...(((.(((((((((((((.(((..((.((((((((...(((((.((((((.((.(((..((((((((.(((.(((..((((.((((......)))).))))...))).))).))))))))..))).)).))))))...))))))))).)))).))..))).))))))))))))))))....)))))

Structure
gg     -ucc   A             C   CU  c    -    aau     --u      g  g   ac        c   c   -uc    g    ga 
  aaugg    aag GAGCUUCCUUCAG CCA  Ca ggag gaga   ggggu   gaauua cu ccg  ucauucau caa cac   agua aaag  u
  |||||    ||| ||||||||||||| |||  || |||| ||||   |||||   |||||| || |||  |||||||| ||| |||   |||| ||||   
  uuacc    UUC CUCGAGGGAAGUC GGU  gu ccuu cucu   cccua   uuugau ga ggc  aguaagug guu gug   ucgu uuuu  a
--     ccuu   -             A   Uc  u    u    ---     ucu      a  g   gu        a   a   uca    g    gg 


Annotation confidence Not enough data
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Genome context
chr3: 56451852-56452046 [+]

Database links

Mature sly-miR319c-5p

Accession MIMAT0035431
Description Solanum lycopersicum sly-miR319c-5p mature miRNA
Sequence 14 - AGAGCUUCCUUCAGCCCACUC - 34
Evidence experimental
Illumina [1]

Mature sly-miR319c-3p

Accession MIMAT0035432
Description Solanum lycopersicum sly-miR319c-3p mature miRNA
Sequence 166 - UUGGACUGAAGGGAGCUCCUU - 186
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739