Stem-loop sly-MIR9469

Accession

MI0029101

Description

Solanum lycopersicum sly-MIR9469 precursor miRNA

Literature search

1 open access papers mention sly-MIR9469
(1 sentences)

Sequence

3237 reads, 107.0 reads per million, 79 experiments

caaaagcuagcucaugaggagagguUUGUCAAGUCCACAUAAGAAGAccgaauucccaucccucuaccgcugugggacaucuuaaugggaauucggucuucuuauguggacuugACAAACCUCUCCUCAUGAguuagcuuuug
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(.......).))))........))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                          --------    u ua 
caaaagcuagcucaugaggagagguUUGUCAAGUCCACAUAAGAAGAccgaauuccca        uccc c  c
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| |  c
guuuucgauugAGUACUCCUCUCCAAACAguucagguguauucuucuggcuuaagggu        aggg g  g
                                                          aauucuac    u uc 

Annotation confidence Low

Genome context

chr7: 58623979-58624121 [-]

Mature sly-miR9469-5p

• Accession: MIMAT0035435
• Description: Solanum lycopersicum sly-miR9469-5p mature miRNA
• Sequence: 26 - UUGUCAAGUCCACAUAAGAAGA - 47
• Evidence: experimental ; Illumina [1]

Mature sly-miR9469-3p

• Accession: MIMAT0035436
• Description: Solanum lycopersicum sly-miR9469-3p mature miRNA
• Sequence: 115 - ACAAACCUCUCCUCAUGA - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739