Stem-loop sly-MIR9471b

Accession

MI0029104

Description

Solanum lycopersicum sly-MIR9471b precursor miRNA MIR9471

Gene
family

RF04098; MIR9471

Literature search

3 open access papers mention sly-MIR9471b
(3 sentences)

Sequence

264306 reads, 4357.0 reads per million, 80 experiments

gaaaugauuuugugaaaaaaaauuggaucuuugacugauuugggguuuugagauucaguugauuucugagGUGCUCACUCAGCUAAUAguuauuguuuaagaaacucaauaauauuggcagcaaggagaauggugacuuucaggaugauaacuaUUGGCUGAGUGAGCAUCACugaaaucgacaugauucugagaggaaaaugacugauugaaagauguauuuauuaaaaaaauuguuuu
(((((((((((.........(((((((((((.((((.......))))..)))))))))))((((((.(.(((((((((((((((((((((((((((((..((((.(((......(((....))).........))).)))).))))))))))))))))))))))))))))).).)))))).((((..(((....((........))....)))..))))..........)))))))))))

Structure

           gugaaaaaaaauuggaucuuugacugauuugggguuuugagauucaguu      u a                             aa    c   ---auaaua   g 
gaaaugauuuu                                                 gauuuc g gGUGCUCACUCAGCUAAUAguuauuguuu  gaaa uca         uug c
|||||||||||                                                 |||||| | |||||||||||||||||||||||||||||  |||| |||         |||  
uuuuguuaaaa                                                 cuaaag C CUACGAGUGAGUCGGUUaucaauaguagg  cuuu agu         aac a
           aaauuauuuauguagaaaguuagucaguaaaaggagagucuuaguacag      u A                             -a    c   gguaagagg   g 

Annotation confidence Medium

Genome context

chr12: 1979337-1979576 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR9471b

Mature sly-miR9471b-5p

• Accession: MIMAT0035441
• Description: Solanum lycopersicum sly-miR9471b-5p mature miRNA
• Sequence: 71 - GUGCUCACUCAGCUAAUA - 88
• Evidence: experimental ; Illumina [1]

Mature sly-miR9471b-3p

• Accession: MIMAT0035442
• Description: Solanum lycopersicum sly-miR9471b-3p mature miRNA
• Sequence: 155 - UUGGCUGAGUGAGCAUCAC - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739