Stem-loop sly-MIR166c

Accession

MI0029105

Description

Solanum lycopersicum sly-MIR166c precursor miRNA

Literature search

25 open access papers mention sly-MIR166c
(91 sentences)

Sequence

uguguguggugaguuugaggGGGAUGUUGUCUGGCUCGACAcaauuacucuauuguauguauuuaguuauucguuaucaagauugaugucgauaacgaauaaauuaaacacauauauacaagauguaaaaagggaguaaaggcgUCGGACCAGGCUUCAUUCCUCucaaacaauauucuacuuuuaca
((((.((((...((((((((((((((..((((((.(((((.(..(((((((..(((((((.(((((((((((((((((..(((....))))))))))))).))))))).)))))))((((...)))).....)))))))..).))))).))))))..))))))))))))))......))))...))))

Structure

    --u    ---uga              UU      C     A aa       --------------au       a       -          aa   u 
ugug   gugg      guuugaggGGGAUG  GUCUGG UCGAC c  uuacucu                uguaugu uuuaguu auucguuauc  gau g
||||   ||||      ||||||||||||||  |||||| ||||| |  |||||||                ||||||| ||||||| ||||||||||  |||  
acau   cauc      caaacuCUCCUUAC  CGGACC GGCUg g  aaugagg                auauaca aaauuaa uaagcaauag  cug a
    uuu    uuauaa              UU      A     c ga       gaaaaauguagaacau       c       a          --   u 

Annotation confidence Not enough data

Genome context

chr1: 92621085-92621272 [-]

Mature sly-miR166c-5p

• Accession: MIMAT0035443
• Description: Solanum lycopersicum sly-miR166c-5p mature miRNA
• Sequence: 21 - GGGAUGUUGUCUGGCUCGACA - 41
• Evidence: experimental ; Illumina [1]

Mature sly-miR166c-3p

• Accession: MIMAT0035444
• Description: Solanum lycopersicum sly-miR166c-3p mature miRNA
• Sequence: 145 - UCGGACCAGGCUUCAUUCCUC - 165
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739