Stem-loop sly-MIR5302b

Accession

MI0029106

Description

Solanum lycopersicum sly-MIR5302b precursor miRNA

Literature search

3 open access papers mention sly-MIR5302b
(4 sentences)

Sequence

7418 reads, 389.0 reads per million, 78 experiments

aagcauuuucagcaaaaUGAAAUGCUAUAGUUGGAAAGUucuaaacauuucggaugauaguuccaaaguaacaaaucucguuugaaugucucuugaucaacuuuuauauauauauauauauauauauccaaacgagguuuguuacuuuggaauaucuuucgaaaucugaaAAACUUUUCAACUAUAGCAUUAuuuuuugcggaaaauuuguuu
((((((((((.((((((...((((((((((((((((((((......((((((((.((((.((((((((((((((((((((((((...(((....))).......(((((((((....)))))))))..)))))))))))))))))))))))))))).))))))))......))))))))))))))))))))...)))))).)))))..)))))

Structure

     --     a      UGA                    cuaaac        u    g                        aaugucucuugaucaacuuu         a 
aagca  uuuuc gcaaaa   AAUGCUAUAGUUGGAAAGUu      auuucgga gaua uuccaaaguaacaaaucucguuug                    uauauauau u
|||||  ||||| ||||||   ||||||||||||||||||||      |||||||| |||| ||||||||||||||||||||||||                    |||||||||  
uuugu  aaaag cguuuu   UUACGAUAUCAACUUUUCAA      uaaagcuu cuau aagguuucauuguuuggagcaaac                    auauauaua a
     uu     g      uuA                    Aaaguc        u    -                        ------------------cu         u 

Annotation confidence Medium

Genome context

chr7: 4228975-4229187 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR5302b

Mature sly-miR5302b-5p

• Accession: MIMAT0035445
• Description: Solanum lycopersicum sly-miR5302b-5p mature miRNA
• Sequence: 18 - UGAAAUGCUAUAGUUGGAAAGU - 39
• Evidence: experimental ; Illumina [1]

Mature sly-miR5302b-3p

• Accession: MIMAT0035446
• Description: Solanum lycopersicum sly-miR5302b-3p mature miRNA
• Sequence: 171 - AAACUUUUCAACUAUAGCAUUA - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739