Stem-loop sly-MIR9471a

Accession

MI0029107

Description

Solanum lycopersicum sly-MIR9471a precursor miRNA MIR9471

Gene
family

RF04098; MIR9471

Literature search

3 open access papers mention sly-MIR9471a
(4 sentences)

Sequence

gaucauugacggauuugggguucugagauucaguugauuucuCAGGUGCUCACUCAGCUAAUAguuauuauuuaagaaacucaauaauauuggcagcaaggagaauggugacuuucaggaugauaacuaUUGGCUGAGUGAGCAUCACGGaaaucgacgugauucugagaggaaaaugauu
(((((((.............((((.(((.(((((((((((((..(((((((((((((((((((((((((((((..((((.(((......(((....))).........))).)))).)))))))))))))))))))))))))))))..)))))))))).))).))).))))...)))))))

Structure

       gacggauuugggg    g   u   -          CA                             aa    c   ---auaaua   g 
gaucauu             uucu aga uca guugauuucu  GGUGCUCACUCAGCUAAUAguuauuauuu  gaaa uca         uug c
|||||||             |||| ||| ||| ||||||||||  |||||||||||||||||||||||||||||  |||| |||         |||  
uuaguaa             gaga ucu agu cagcuaaaGG  CUACGAGUGAGUCGGUUaucaauaguagg  cuuu agu         aac a
       ----------aag    g   u   g          CA                             -a    c   gguaagagg   g 

Annotation confidence Not enough data

Genome context

chr12: 1977726-1977906 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR9471a

Mature sly-miR9471a-5p

• Accession: MIMAT0035447
• Description: Solanum lycopersicum sly-miR9471a-5p mature miRNA
• Sequence: 43 - CAGGUGCUCACUCAGCUAAUA - 63
• Evidence: experimental ; Illumina [1]

Mature sly-miR9471a-3p

• Accession: MIMAT0035448
• Description: Solanum lycopersicum sly-miR9471a-3p mature miRNA
• Sequence: 130 - UUGGCUGAGUGAGCAUCACGG - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739