Stem-loop sly-MIR9472

Accession

MI0029108

Description

Solanum lycopersicum sly-MIR9472 precursor miRNA

Literature search

2 open access papers mention sly-MIR9472
(6 sentences)

Sequence

auggguuucaauuauagcuacagaucuucccauagaucuacucgauuuauuUUUCAGUAGACGUUGUGAAUAauugauaaauacagguauacagaggucuuaauauagucagaaccuagaaauauguguaacuagauucagaccuuuguacacuuguauucuguugcuaUUCACAAUCUCUGCUGAAAAAugauugacuagaucuacgaauaaucuagauuauuaaugcccgu
((((((.......((((((..((((.(((...((((((((.((((((.(((((((((((((.((((((((((..((((((((((((((.(((((((((((.(((.((((....((.((....)).))...)))).))).))))))))))).))))))))).))))).)))))))))).))))))))))))))))))).)))))))).)))..)))))).))))....))))))

Structure

      uucaauu    -  ac    -c   cca        c      u             C          au     -         a           u   a    caga  c  g 
augggu       auag cu  agau  uuc   uagaucua ucgauu auuUUUCAGUAGA GUUGUGAAUA  ugaua aauacaggu uacagaggucu aau uagu    ac ua a
||||||       |||| ||  ||||  |||   |||||||| |||||| ||||||||||||| ||||||||||  ||||| ||||||||| ||||||||||| ||| ||||    || ||  
ugcccg       uauu ga  ucua  aag   aucuagau aguuag uAAAAAGUCGUCU UAACACUUau  guugu uuauguuca auguuuccaga uua auca    ug au a
      ---uaau    a  --    au   --c        c      -             C          -c     c         c           c   g    -aug  u  a 

Annotation confidence Not enough data

Genome context

chr8: 58966598-58966830 [+]

Mature sly-miR9472-5p

• Accession: MIMAT0035449
• Description: Solanum lycopersicum sly-miR9472-5p mature miRNA
• Sequence: 52 - UUUCAGUAGACGUUGUGAAUA - 72
• Evidence: experimental ; Illumina [1]

Mature sly-miR9472-3p

• Accession: MIMAT0035450
• Description: Solanum lycopersicum sly-miR9472-3p mature miRNA
• Sequence: 170 - UUCACAAUCUCUGCUGAAAAA - 190
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739