Stem-loop sly-MIR156d

Accession

MI0029109

Description

Solanum lycopersicum sly-MIR156d precursor miRNA

Literature search

32 open access papers mention sly-MIR156d
(156 sentences)

Sequence

cagaugccuaaaaaggguaaaaacaaaggggcggUGACAGAAGAGAGUGAGCACacauggcguuuucuggcaugauguuuauauauauauaugcuugaaacuauguguGCUCACUGCUCUAUCUGUCACCucccaccaauuccucuaucuuucuuuauauguaucug
(((((((.(((((((((((.........(((.((((((((((((((((((((((((((((...((((.((((((((((......)))).)))))).))))))))))))))))))).)))).))))))))).)))...........))))))).))))...)))))))

Structure

       --c    -       --aaaacaaag   c         -    -               cgu    u      -    uu 
cagaugc   uaaa aagggua           ggg ggUGACAGA AGAG AGUGAGCACacaugg   uuuc ggcaug augu  a
|||||||   |||| |||||||           ||| ||||||||| |||| |||||||||||||||   |||| |||||| ||||   
gucuaug   auuu uuucuau           ccc CCACUGUCU UCUC UCACUCGuguguauc   aaag ucguau uaua  u
       uau    c       cuccuuaacca   u         A    G               ---    u      a    ua 

Annotation confidence Not enough data

Genome context

chr8: 51913686-51913852 [-]

Mature sly-miR156d-5p

• Accession: MIMAT0035451
• Description: Solanum lycopersicum sly-miR156d-5p mature miRNA
• Sequence: 35 - UGACAGAAGAGAGUGAGCAC - 54
• Evidence: experimental ; Illumina [1]

Mature sly-miR156d-3p

• Accession: MIMAT0035452
• Description: Solanum lycopersicum sly-miR156d-3p mature miRNA
• Sequence: 109 - GCUCACUGCUCUAUCUGUCACC - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739