Stem-loop sly-MIR396a

Accession

MI0029111

Description

Solanum lycopersicum sly-MIR396a precursor miRNA

Literature search

21 open access papers mention sly-MIR396a
(128 sentences)

Sequence

3940189 reads, 104185.0 reads per million, 82 experiments

ugauucuuuguguacuuUUCCACAGCUUUCUUGAACUGcauacauauaacaaaaaaaucugauuuuuuuuugauuuuuuuuuacuuuuauaaagaaaaaauuuagauggaaagaauuaaauuguugcgGUUCAAUAAAGCUGUGGGAAGAuacauauaggauca
(((((((.((((((.((((((((((((((.((((((((((.(((............((((((.((((((((.....................)))))))).))))))..............))))))))))))).)))))))))))))).)))))).)))))))

Structure

       u      c              C          u   --uauaacaaaaaa      u        gauuuuuuu 
ugauucu ugugua uuUUCCACAGCUUU UUGAACUGca aca              aucuga uuuuuuuu         u
||||||| |||||| |||||||||||||| |||||||||| |||              |||||| ||||||||         u
acuagga auacau GAAGGGUGUCGAAA AACUUGgcgu ugu              uagauu aaaaaaga         a
       u      A              U          -   uaaauuaagaaagg      u        aauauuuuc 

Annotation confidence High

Genome context

chr12: 2905644-2905807 [-]

Mature sly-miR396a-5p

• Accession: MIMAT0035455
• Description: Solanum lycopersicum sly-miR396a-5p mature miRNA
• Sequence: 18 - UUCCACAGCUUUCUUGAACUG - 38
• Evidence: experimental ; Illumina [1]

Mature sly-miR396a-3p

• Accession: MIMAT0035456
• Description: Solanum lycopersicum sly-miR396a-3p mature miRNA
• Sequence: 129 - GUUCAAUAAAGCUGUGGGAAGA - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739