Stem-loop sly-MIR482d

Accession

MI0029113

Description

Solanum lycopersicum sly-MIR482d precursor miRNA

Literature search

23 open access papers mention sly-MIR482d
(266 sentences)

Sequence

155390 reads, 1992.0 reads per million, 80 experiments

ggaaagggaggagggauuugggaaucuuuuGGAGUGGGUGGGAUGGAAAAAuauuguauuuuuuuuucuaacggaaaaaaagaugagaauugagauuUUUCCUAUUCCACCCAUGCCAAUGGcuuccagucauuuacuccuuuucc
((((((((((....((((..((((.((.((((.((((((((((((((((((((((.(((((((((((((...)))))))))))))..)))....)))))))).))))))))))).)))).)).)))))))).....))))))))))

Structure

          -gagg    ug    u  u    A           -        ----   -g             a 
ggaaagggag     gauu  ggaa cu uuGG GUGGGUGGGAU GGAAAAAu    auu  uauuuuuuuuucu  
||||||||||     ||||  |||| || |||| ||||||||||| ||||||||    |||  ||||||||||||| a
ccuuuuccuc     cuga  ccuu GG AACC UACCCACCUUA CCUUUuua    uaa  guagaaaaaaagg  
          auuua    --    c  U    G           U        gagu   ga             c 

Annotation confidence Medium

Genome context

chr6: 37380095-37380240 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sly-MIR482d

Mature sly-miR482d-5p

• Accession: MIMAT0035459
• Description: Solanum lycopersicum sly-miR482d-5p mature miRNA
• Sequence: 31 - GGAGUGGGUGGGAUGGAAAAA - 51
• Evidence: experimental ; Illumina [1]

Mature sly-miR482d-3p

• Accession: MIMAT0035460
• Description: Solanum lycopersicum sly-miR482d-3p mature miRNA
• Sequence: 98 - UUUCCUAUUCCACCCAUGCCAAUGG - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739