Stem-loop sly-MIR9474

Accession

MI0029115

Description

Solanum lycopersicum sly-MIR9474 precursor miRNA

Literature search

3 open access papers mention sly-MIR9474
(3 sentences)

Sequence

392396 reads, 20724.0 reads per million, 82 experiments

cacauaggucuguaacugggccacaauuacuguagaagucaugaauaaaaugugguuauaacgagugcuacuaguucugaaaaaucaaaauucucaguugaccuugucacucauuucuuuuuucuuuggaaauuauuAACCCCGAUAAAAUCUAAGUUUccaaaggcuuuaauguuacucgucaaguaaauggugaugaguugguaauguuaagguuuuuGGAAUCUUGGAUUUUAUCGGAGuuaaugacuuuugaaggaaagaaaugaguggcuaagucgauggagaauuuugauuuuucagaaccaguaacacucauuaugacuacauuuuguucgcagauacuacagugauuguagccauuuuauggacucaugug
(((((.(((((((((...(((.(((((((((((((..(((.((((((((((((((((((((.(((((.((((.((((((((((((((((((((((.((((((...((((((((((((((..((((((((((.((((((((.(((((((((((((((.(((((((((((((((((((((((((((.........))))))))....))))))))))))))))))).))))))))))))))).)))))))).))))))))))))))))))))))))...)))))).)))))))))))))))))))))).)))).))))).))))))))))))))))))))..))).))))))))))))).)))...))))))))).)))))

Structure

     a         cug   c             aa   -a                    c     c    a                      a      cuu              uu          a        C               U                   ----        agu 
cacau ggucuguaa   ggc acaauuacuguag  guc  ugaauaaaaugugguuauaa gagug uacu guucugaaaaaucaaaauucuc guugac   gucacucauuucuu  uucuuuggaa uuauuAAC CCGAUAAAAUCUAAG UUccaaaggcuuuaauguu    acucguca   a
||||| |||||||||   ||| |||||||||||||  |||  |||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||   ||||||||||||||  |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||    ||||||||   a
gugua ucagguauu   ccg uguuagugacauc  uag  gcuuguuuuacaucaguauu cucac auga caagacuuuuuaguuuuaagag uagcug   cggugaguaaagaa  aggaaguuuu aguaauuG GGCUAUUUUAGGUUC AAGGuuuuuggaauuguaa    ugaguagu   a
     c         uua   a             -a   ac                    a     a    c                      g      aau              --          c        A               U                   uggu        ggu 

Annotation confidence Low

Genome context

chr8: 62139543-62139921 [-]

Mature sly-miR9474-5p

• Accession: MIMAT0035463
• Description: Solanum lycopersicum sly-miR9474-5p mature miRNA
• Sequence: 138 - AACCCCGAUAAAAUCUAAGUUU - 159
• Evidence: experimental ; Illumina [1]

Mature sly-miR9474-3p

• Accession: MIMAT0035464
• Description: Solanum lycopersicum sly-miR9474-3p mature miRNA
• Sequence: 221 - GGAAUCUUGGAUUUUAUCGGAG - 242
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739