Stem-loop sly-MIR9474

Accession

MI0029115

Description

Solanum lycopersicum sly-MIR9474 precursor miRNA

Literature search

2 open access papers mention sly-MIR9474
(3 sentences)

Sequence

cacauaggucuguaacugggccacaauuacUGUAGAAGUCAUGAAUAAAAUGugguuauaacgagugcuacuaguucugaaaaaucaaaauucucaguugaccuugucacucauuucuuuuuucuuuggaaauuauuaaccccgauaaaaucuaaguuuccaaaggcuuuaauguuacucgucaaguaaauggugaugaguugguaauguuaagguuuuuggaaucuuggauuuuaucggaguuaaugacuuuugaaggaaagaaaugaguggcuaagucgauggagaauuuugauuuuucagaaccaguaacacucauuaugacuacaUUUUGUUCGCAGAUACUACAGUgauuguagccauuuuauggacucaugug
(((((.(((((((((...(((.(((((((((((((..(((.((((((((((((((((((((.(((((.((((.((((((((((((((((((((((.((((((...((((((((((((((..((((((((((.((((((((.(((((((((((((((.(((((((((((((((((((((((((((.........))))))))....))))))))))))))))))).))))))))))))))).)))))))).))))))))))))))))))))))))...)))))).)))))))))))))))))))))).)))).))))).))))))))))))))))))))..))).))))))))))))).)))...))))))))).)))))

Structure

     a         cug   c             AA   -A                    c     c    a                      a      cuu              uu          a        c               u                   ----        agu 
cacau ggucuguaa   ggc acaauuacUGUAG  GUC  UGAAUAAAAUGugguuauaa gagug uacu guucugaaaaaucaaaauucuc guugac   gucacucauuucuu  uucuuuggaa uuauuaac ccgauaaaaucuaag uuccaaaggcuuuaauguu    acucguca   a
||||| |||||||||   ||| |||||||||||||  |||  |||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||   ||||||||||||||  |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||    ||||||||   a
gugua ucagguauu   ccg uguuagUGACAUC  UAG  GCUUGUUUUacaucaguauu cucac auga caagacuuuuuaguuuuaagag uagcug   cggugaguaaagaa  aggaaguuuu aguaauug ggcuauuuuagguuc aagguuuuuggaauuguaa    ugaguagu   a
     c         uua   a             -A   AC                    a     a    c                      g      aau              --          c        a               u                   uggu        ggu 

Annotation confidence Not enough data

Genome context

chr8: 62139543-62139921 [-]

Mature sly-miR9474-5p

• Accession: MIMAT0035463
• Description: Solanum lycopersicum sly-miR9474-5p mature miRNA
• Sequence: 31 - UGUAGAAGUCAUGAAUAAAAUG - 52
• Evidence: experimental ; Illumina [1]

Mature sly-miR9474-3p

• Accession: MIMAT0035464
• Description: Solanum lycopersicum sly-miR9474-3p mature miRNA
• Sequence: 330 - UUUUGUUCGCAGAUACUACAGU - 351
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739